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Novel Reductive Dehalogenases from the Marine Sponge Associated Bacterium Desulfoluna spongiiphila

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TypeOfResource
Text
TitleInfo
Title
Novel Reductive Dehalogenases from the Marine Sponge Associated Bacterium Desulfoluna spongiiphila
Name (type = personal)
NamePart (type = family)
Liu
NamePart (type = given)
Jie
Affiliation
Biochemistry and Microbiology, Rutgers University
Role
RoleTerm (authority = marcrt); (type = text)
author
Name (type = personal)
NamePart (type = family)
Lopez
NamePart (type = given)
Nora
Affiliation
Biochemistry and Microbiology; Marine and Coastal Sciences, Rutgers University
Role
RoleTerm (authority = marcrt); (type = text)
author
Name (type = personal)
NamePart (type = family)
Ahn
NamePart (type = given)
Youngbeom
Affiliation
Biochemistry and Microbiology, Rutgers University
Role
RoleTerm (authority = marcrt); (type = text)
author
Name (type = personal)
NamePart (type = family)
Goldberg
NamePart (type = given)
Tatyana
Affiliation
Technische Universität München (Technical University Munich)
Role
RoleTerm (authority = marcrt); (type = text)
author
Name (type = personal)
NamePart (type = family)
Bromberg
NamePart (type = given)
Yana
Affiliation
Biochemistry and Microbiology, Rutgers University
Role
RoleTerm (authority = marcrt); (type = text)
author
Name (type = personal)
NamePart (type = family)
Kerkhof
NamePart (type = given)
Lee J.
Affiliation
Marine and Coastal Sciences, Rutgers University
Role
RoleTerm (authority = marcrt); (type = text)
author
Name (authority = orcid); (authorityURI = http://id.loc.gov/vocabulary/identifiers/orcid.html); (type = personal); (valueURI = http://orcid.org/0000-0001-6307-7863)
NamePart (type = family)
Häggblom
NamePart (type = given)
Max M.
Affiliation
Biochemistry and Microbiology, Rutgers University
Role
RoleTerm (authority = marcrt); (type = text)
author
Name (authority = RutgersOrg-Department); (type = corporate)
NamePart
Biochemistry and Microbiology
Name (authority = RutgersOrg-Department); (type = corporate)
NamePart
Marine and Coastal Sciences
Name (authority = RutgersOrg-School); (type = corporate)
NamePart
School of Environmental and Biological Sciences (SEBS)
Genre (authority = RULIB-FS)
Article, Refereed
Genre (authority = NISO JAV)
Accepted Manuscript (AM)
Note (type = peerReview)
Peer reviewed
OriginInfo
DateIssued (encoding = w3cdtf); (keyDate = yes)
2017
Abstract (type = Abstract)
Desulfoluna spongiiphila strain AA1 is an organohalide respiring bacterium, isolated from the marine sponge Aplysina aerophoba, that can use brominated and iodinated phenols, in addition to sulfate and thiosulfate as terminal electron acceptors. The genome of Desulfoluna spongiiphila strain AA1 is approximately 6.5 Mb. Three putative reductive dehalogenase (rdhA) genes involved in respiratory metabolism of organohalides were identified within the sequence. Conserved motifs found in respiratory reductive dehalogenases (a twin arginine translocation signal sequence and two iron-sulfur clusters) were present in all three putative AA1 rdhA genes. Transcription of one of the three rdhA genes was significantly upregulated during respiration of 2,6-dibromophenol and sponge extracts. Strain AA1 appears to have the ability to synthesize cobalamin, the key cofactor of most characterized reductive dehalogenase enzymes. The genome contains genes involved in cobalamin synthesis and uptake and can grow without cobalamin supplementation. Identification of this target gene associated with debromination lays the foundation for understanding how dehalogenating bacteria control the fate of organohalide compounds in sponges and their role in a symbiotic organobromine cycle. In the sponge environment, D. spongiiphila strain AA1 may thus take advantage of both brominated compounds and sulfate as electron acceptors for respiration.
PhysicalDescription
InternetMediaType
application/pdf
Extent
47 p.
Extension
DescriptiveEvent
Type
Citation
DateTime (encoding = w3cdtf)
2017
AssociatedObject
Name
Environmental Microbiology Reports
Type
Journal
Relationship
Has part
Detail
537-549
Identifier (type = volume and issue)
9(5)
Reference (type = url)
https://doi.org/10.1111/1758-2229.12556
Extension
DescriptiveEvent
Type
Grant award
AssociatedEntity
Role
Funder
Name
National Science Foundation
AssociatedEntity
Role
Originator
Name
Max Haggblom
AssociatedObject
Type
Grant number
Name
OCE-451708
Language
LanguageTerm (authority = ISO 639-3:2007); (type = text)
English
Subject (authority = local)
Topic
FITOBACTERIUM-HAFNIENSE Y51
Subject (authority = local)
Topic
DESULFOMONILE-TIEDJEI DCB-1
Subject (authority = local)
Topic
MCCARTYI STRAIN CBDB1
Subject (authority = local)
Topic
DEHALOCOCCOIDES-MCCARTYI
Subject (authority = local)
Topic
APLYSINA-AEROPHOBA
Subject (authority = local)
Topic
DEHALOBACTER-RESTRICTUS
Subject (authority = local)
Topic
Functional genomics
Subject (authority = local)
Topic
Estuarine sediments
Subject (authority = local)
Topic
Verongia-Aerophoba
Subject (authority = local)
Topic
Diphenyl ethers
RelatedItem (type = host)
TitleInfo
Title
Häggblom, Max M.
Identifier (type = local)
rucore30202400001
RelatedItem (type = host)
TitleInfo
Title
Liu, Jie
Identifier (type = local)
rucore30247800001
RelatedItem (type = host)
TitleInfo
Title
Bromberg, Yana
Identifier (type = local)
rucore30248000001
RelatedItem (type = host)
TitleInfo
Title
Kerkhof, Lee J.
Identifier (type = local)
rucore30202800001
Location
PhysicalLocation (authority = marcorg); (displayLabel = Rutgers, The State University of New Jersey)
NjNbRU
Identifier (type = doi)
doi:10.7282/T30P1386
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RightsDeclaration (AUTHORITY = FS); (TYPE = [FS] statement #1); (ID = rulibRdec0004)
Copyright for scholarly resources published in RUcore is retained by the copyright holder. By virtue of its appearance in this open access medium, you are free to use this resource, with proper attribution, in educational and other non-commercial settings. Other uses, such as reproduction or republication, may require the permission of the copyright holder.
Copyright
Status
Copyright protected
Availability
Status
Open
Reason
Permission or license
RightsEvent
Type
Permission or license
AssociatedObject
Type
License
Name
Multiple author license v. 1
Detail
I hereby grant to Rutgers, The State University of New Jersey (Rutgers) the non-exclusive right to retain, reproduce, and distribute the deposited work (Work) in whole or in part, in and from its electronic format, without fee. This agreement does not represent a transfer of copyright to Rutgers.Rutgers may make and keep more than one copy of the Work for purposes of security, backup, preservation, and access and may migrate the Work to any medium or format for the purpose of preservation and access in the future. Rutgers will not make any alteration, other than as allowed by this agreement, to the Work.I represent and warrant to Rutgers that the Work is my original work. I also represent that the Work does not, to the best of my knowledge, infringe or violate any rights of others.I further represent and warrant that I have obtained all necessary rights to permit Rutgers to reproduce and distribute the Work and that any third-party owned content is clearly identified and acknowledged within the Work.By granting this license, I acknowledge that I have read and agreed to the terms of this agreement and all related RUcore and Rutgers policies.
RightsEvent
Type
Embargo
DateTime (point = end); (encoding = w3cdtf)
2018-07-21
Detail
Access to this PDF has been restricted at the publisher's request. It will be publicly available after July 21, 2018.
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Technical

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ContentModel
Document
CreatingApplication
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1.6
DateCreated (point = end); (encoding = w3cdtf); (qualifier = exact)
2018-04-02T12:02:52
DateCreated (point = end); (encoding = w3cdtf); (qualifier = exact)
2018-04-02T12:04:00
ApplicationName
Microsoft® Word 2016
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