LanguageTerm (authority = ISO 639-3:2007); (type = text)
English
Abstract (type = abstract)
Developmental toxicity is a critical health hazard that needs to be addressed in chemical risk assessments. Traditional animal testing for developmental toxicity evaluations is expensive, time consuming and requires a large number of animals. High throughput screening is one such low cost method that has been used to test a large number of chemicals for toxicity and computational modeling is a promising approach to quickly evaluate chemical toxicity. In this paper, we collected a large database consisting of 1,365 unique chemicals with their in vivo developmental toxicity potentials from various sources. The database was searched against PubChem, a public repository, to establish in vitro bioprofiles of the chemicals. The PubChem in vitro assays were clustered based on relationships between structural fragments and cellular responses in the assays, to identify relevant assays that may reveal the underlying toxicity mechanisms for developmental toxicity. The PubChem in vitro assay clusters were used for read-across studies for predicting developmental toxicity and several clusters had high positive prediction rates in the cross-validation process. With further analysis, several interesting chemical toxic alerts were identified from the read-across studies for different clusters. These alerts can be used to establish molecular initiating events (MIE) in vitro and link to in vivo through an adverse outcome pathway (AOP), to improve the read-across prediction rates. The results indicate that if a chemical contains the chemical toxic alert and shows active response in the relevant bioassay, it has high potential to be a developmental toxicant. Novel mechanisms for developmental toxicity were also revealed in this study. This modeling approach can be used to predict a new chemical for developmental toxicity and can be extended for use in other toxicity end points.
Subject (authority = local)
Topic
Developmental toxicity
Subject (authority = local)
Topic
Read-across
Subject (authority = local)
Topic
Chemical toxic alerts
Subject (authority = local)
Topic
Molecularinitiating event
Subject (authority = LCSH)
Topic
Developmental toxicology
Subject (authority = RUETD)
Topic
Computational and Integrative Biology
RelatedItem (type = host)
TitleInfo
Title
Rutgers University Electronic Theses and Dissertations
Identifier (type = RULIB)
ETD
Identifier
ETD_10951
PhysicalDescription
Form (authority = gmd)
InternetMediaType
application/pdf
InternetMediaType
text/xml
Extent
1 online resource (vii, 24 pages) : illustrations
Note (type = degree)
M.S.
Note (type = bibliography)
Includes bibliographical references
RelatedItem (type = host)
TitleInfo
Title
Camden Graduate School Electronic Theses and Dissertations
Identifier (type = local)
rucore10005600001
Location
PhysicalLocation (authority = marcorg); (displayLabel = Rutgers, The State University of New Jersey)
I hereby grant to the Rutgers University Libraries and to my school the non-exclusive right to archive, reproduce and distribute my thesis or dissertation, in whole or in part, and/or my abstract, in whole or in part, in and from an electronic format, subject to the release date subsequently stipulated in this submittal form and approved by my school. I represent and stipulate that the thesis or dissertation and its abstract are my original work, that they do not infringe or violate any rights of others, and that I make these grants as the sole owner of the rights to my thesis or dissertation and its abstract. I represent that I have obtained written permissions, when necessary, from the owner(s) of each third party copyrighted matter to be included in my thesis or dissertation and will supply copies of such upon request by my school. I acknowledge that RU ETD and my school will not distribute my thesis or dissertation or its abstract if, in their reasonable judgment, they believe all such rights have not been secured. I acknowledge that I retain ownership rights to the copyright of my work. I also retain the right to use all or part of this thesis or dissertation in future works, such as articles or books.