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Improved nonalcoholic fatty liver disease diagnosis from ultrasound data based on deep learning

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TitleInfo
Title
Improved nonalcoholic fatty liver disease diagnosis from ultrasound data based on deep learning
Name (type = personal)
NamePart (type = family)
Che
NamePart (type = given)
Hui
NamePart (type = date)
1995
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Hui Che
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RoleTerm (authority = RULIB); (type = text)
author
Name (type = personal)
NamePart (type = family)
Hacihaliloglu
NamePart (type = given)
Ilker
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Ilker Hacihaliloglu
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Advisory Committee
Role
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chair
Name (type = personal)
NamePart (type = family)
Boustany
NamePart (type = given)
Nada N.
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Nada N. Boustany
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Advisory Committee
Role
RoleTerm (authority = RULIB)
internal member
Name (type = personal)
NamePart (type = family)
Pierce
NamePart (type = given)
Mark
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Mark Pierce
Affiliation
Advisory Committee
Role
RoleTerm (authority = RULIB)
internal member
Name (type = corporate)
NamePart
Rutgers University
Role
RoleTerm (authority = RULIB)
degree grantor
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School of Graduate Studies
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school
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Text
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theses
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2021
DateOther (type = degree); (qualifier = exact); (encoding = w3cdtf)
2021-01
Language
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English
Abstract
Nonalcoholic fatty liver disease (NAFLD) is one of the most common chronic liver diseases and its incidence increases year by year on the global scale as the quality of life improves. The asymptomatic characteristics of NAFLD prevents timely diagnosis, so it is becoming more and more urgent to find effective diagnosis and treatment methods to serve patients. Ultrasound (US) is the preferred noninvasive modality to detect steatosis due to its real-time and cost-effective imaging capabilities. However, the sensitivity of traditional B-mode US cannot support steatosis detection, which has a fat content less than 20%. Furthermore, current practice mostly relies on visual investigation of the collected data by expert clinicians there is qualitative and very subjective. With the success of deep learning-based methods applied in medical image analysis, various convolutional neural networks (CNNs) draw a lot of attention and have been investigated for classifying liver diseases from US data as well. The purpose of the deep learning is to automatically learn high-level abstractions from medical data. However, designing accurate and robust CNN architectures requires large amount of input data and balanced classes. These issues remain to be significant challenges in medical image processing since the available medical data is scarce. Therefore, many studies consider to overcome these shortcomings at the same time for facilitating model classification performance.

In this thesis, novel deep learning models are proposed for NAFLD classification and image synthesis from B-mode US data. For the main task of classification, we design a multi-feature guided multi-scale residual CNN architecture to capture features of different receptive fields. Besides the use of original data, an image processing method for feature enhancement is introduced for diverse and robust information. B-mode US images are combined with their corresponding local phase filtered images and radial symmetry transformed images as multi-feature inputs for the network. Various fusion strategies are studied to improve prediction accuracy. To address the problems of small datasets and class imbalance, a computational method based on Generative Adversarial Network (GAN) is proposed to synthesize B-mode US images. In order to make the generated images look more realistic, self-attention blocks are added to the network for the maintenance of important structural information. We evaluate the designed networks on 550 B-mode in vivo liver US images collected from 55 subjects. Quantitative results show an average classification accuracy above 90% over 10-fold cross-validation. Comprehensive validation results further demonstrate that our proposed approaches achieve significant improvements compared to the state-of-the-art medical image classification methods. Furthermore, the image synthesis network is validated using the whole image and cropped patches, and results show it has a strong ability to generate the whole image with realistic details. In the situation that a larger balanced NAFLD training dataset is produced including real and synthesized data, the multi-feature multi-scale CNN acquires better classification performance no matter according to the result from the whole image or patch data. Based on the promising performance, the proposed methods have the potential in practical applications to help radiologists diagnose NAFLD.
Subject (authority = local)
Topic
Ultrasound
Subject (authority = RUETD)
Topic
Biomedical Engineering
RelatedItem (type = host)
TitleInfo
Title
Rutgers University Electronic Theses and Dissertations
Identifier (type = RULIB)
ETD
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ETD_11368
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application/pdf
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Extent
1 online resource (ix, 56 pages)
Note (type = degree)
M.S.
Note (type = bibliography)
Includes bibliographical references
Genre (authority = ExL-Esploro)
ETD graduate
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Title
School of Graduate Studies Electronic Theses and Dissertations
Identifier (type = local)
rucore10001600001
Location
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NjNbRU
Identifier (type = doi)
doi:10.7282/t3-wwwc-hp57
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Rights

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The author owns the copyright to this work.
RightsHolder (type = personal)
Name
FamilyName
Che
GivenName
Hui
Role
Copyright Holder
RightsEvent
Type
Permission or license
DateTime (encoding = w3cdtf); (qualifier = exact); (point = start)
2020-12-21 01:27:29
AssociatedEntity
Name
Hui Che
Role
Copyright holder
Affiliation
Rutgers University. School of Graduate Studies
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Author Agreement License
Detail
I hereby grant to the Rutgers University Libraries and to my school the non-exclusive right to archive, reproduce and distribute my thesis or dissertation, in whole or in part, and/or my abstract, in whole or in part, in and from an electronic format, subject to the release date subsequently stipulated in this submittal form and approved by my school. I represent and stipulate that the thesis or dissertation and its abstract are my original work, that they do not infringe or violate any rights of others, and that I make these grants as the sole owner of the rights to my thesis or dissertation and its abstract. I represent that I have obtained written permissions, when necessary, from the owner(s) of each third party copyrighted matter to be included in my thesis or dissertation and will supply copies of such upon request by my school. I acknowledge that RU ETD and my school will not distribute my thesis or dissertation or its abstract if, in their reasonable judgment, they believe all such rights have not been secured. I acknowledge that I retain ownership rights to the copyright of my work. I also retain the right to use all or part of this thesis or dissertation in future works, such as articles or books.
Copyright
Status
Copyright protected
Availability
Status
Open
Reason
Permission or license
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2020-12-24T15:54:54
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2020-12-24T15:54:54
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