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Tuning molecular separation to improve detection sensitivity in solution-based assays

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TitleInfo
Title
Tuning molecular separation to improve detection sensitivity in solution-based assays
Name (type = personal)
NamePart (type = family)
Xue
NamePart (type = given)
Zhaolin
NamePart (type = date)
1996
DisplayForm
Xue, Zhaolin, 1996-
Role
RoleTerm (authority = RULIB); (type = text)
author
Name (type = personal)
NamePart (type = family)
Fabris
NamePart (type = given)
Laura
DisplayForm
Laura Fabris
Affiliation
Advisory Committee
Role
RoleTerm (authority = RULIB)
chair
Name (type = corporate)
NamePart
Rutgers University
Role
RoleTerm (authority = RULIB)
degree grantor
Name (type = corporate)
NamePart
School of Graduate Studies
Role
RoleTerm (authority = RULIB)
school
TypeOfResource
Text
Genre (authority = marcgt)
theses
OriginInfo
DateCreated (encoding = w3cdtf); (keyDate = yes); (qualifier = exact)
2020
DateOther (encoding = w3cdtf); (qualifier = exact); (type = degree)
2020-05
Language
LanguageTerm (authority = ISO 639-3:2007); (type = text)
English
Abstract (type = abstract)
Metal nanoparticles have unique physical and optical properties stemming from their
nanoscale dimensions, inducing strong localized surface plasmon resonance (LSPR), which
lead them to find extensive applications in chemi-sensors and biosensors. By concentrating
the incident electromagnetic (EM) field near the nanostructure, LSPR modes can enhance the
local scattered EM field and affect optical processes such as Raman scattering and
fluorescence, giving rise to the so-called surface-enhanced Raman scattering (SERS) and
plasmon-enhanced fluorescence (PEF). Because they both depend on the distance between the
reporting molecules and the nanoparticles but at different regimes, SERS and PEF become
dominant separately and can be thus leveraged to design orthogonal transduction mechanisms.
In this thesis, the detection sensitivity in solution-based assays enabled by portable SERS and
molecular beacon-based fluorescence are improved by keeping the molecules close to or
properly away from the surface of the nanoparticles.

For the first part, opioid drug molecules are attracted to the surface of silver nanoparticles and
trapped in the “hot spots” to achieve SERS enhancement through aggregation induced by salt
addition. Salting optimization and aggregation dynamics analysis are carried out for
improving drug detection. NaBr solution is chosen as the aggregation inducing salt at theiii
optimal concentration of 1 M with 3 minutes time window for detection. The improved assay
supports a LOD of ~5 ng/mL for fentanyl spiked in urine controls and a LOD of ~0.1 % (10
ng in 10 µg total) mass percent for fentanyl in laced recreational drugs such as heroin or THC,
which surpasses the results achieved in comparable previous reports.

For the second part, fluorophores in molecular beacons (MBs) are pushed away from the
surface of gold nanoparticles via hybridization of the beacons with nucleic-acid strand targets,
but still kept at a well-known distance which depends on the length of the MBs, thus
facilitating PEF and generating enhanced fluorescence signals. A single strand DNA with ten
thymine groups (T10) is also implemented as a spacer to assist the stretching process of MBs
via reduction of steric hindrance. Functionalization of MBs on the surface of gold
nanoparticles is performed along with the optimization of reaction conditions. Based on the
fluorescence enhancement, the proper molar ratio of MBs/ T10-to-gold nanoparticles is 1000/1
for a relatively strong and stable signals enhancement. And the ratio of MBs-to-T10 within the
range of 3~5 has relatively less influence on the result. Calibration curves for the MBs gold
nanoparticles sensor are generated under different concentrations of nucleic-acid strand
targets, indicating a LOD of ~10 nM for room temperature detection and a LOD of ~20 nM at
37.5 ℃
Subject (authority = RUETD)
Topic
Materials Science and Engineering
RelatedItem (type = host)
TitleInfo
Title
Rutgers University Electronic Theses and Dissertations
Identifier (type = RULIB)
ETD
RelatedItem (type = host)
TitleInfo
Title
School of Graduate Studies Electronic Theses and Dissertations
Identifier (type = local)
rucore10001600001
Identifier
ETD_10798
Identifier (type = doi)
doi:10.7282/t3-3qmb-v482
PhysicalDescription
Form (authority = gmd)
InternetMediaType
application/pdf
InternetMediaType
text/xml
Extent
1 online resource (vii, 36 pages)
Note (type = degree)
M.S.
Note (type = bibliography)
Includes bibliographical references
Location
PhysicalLocation (authority = marcorg); (displayLabel = Rutgers, The State University of New Jersey)
NjNbRU
Genre (authority = ExL-Esploro)
ETD graduate
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Rights

RightsDeclaration (ID = rulibRdec0006)
The author owns the copyright to this work.
RightsHolder (type = personal)
Name
FamilyName
Xue
GivenName
Zhaolin
Role
Copyright Holder
RightsEvent
Type
Permission or license
DateTime (encoding = w3cdtf); (qualifier = exact); (point = start)
2020-04-22 14:22:55
AssociatedEntity
Name
Zhaolin Xue
Role
Copyright holder
Affiliation
Rutgers University. School of Graduate Studies
AssociatedObject
Type
License
Name
Author Agreement License
Detail
I hereby grant to the Rutgers University Libraries and to my school the non-exclusive right to archive, reproduce and distribute my thesis or dissertation, in whole or in part, and/or my abstract, in whole or in part, in and from an electronic format, subject to the release date subsequently stipulated in this submittal form and approved by my school. I represent and stipulate that the thesis or dissertation and its abstract are my original work, that they do not infringe or violate any rights of others, and that I make these grants as the sole owner of the rights to my thesis or dissertation and its abstract. I represent that I have obtained written permissions, when necessary, from the owner(s) of each third party copyrighted matter to be included in my thesis or dissertation and will supply copies of such upon request by my school. I acknowledge that RU ETD and my school will not distribute my thesis or dissertation or its abstract if, in their reasonable judgment, they believe all such rights have not been secured. I acknowledge that I retain ownership rights to the copyright of my work. I also retain the right to use all or part of this thesis or dissertation in future works, such as articles or books.
Copyright
Status
Copyright protected
Availability
Status
Open
Reason
Permission or license
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