RUcore: Rutgers University Community Repository
Cranberry (Vaccinium macrocarpon) clone CNJ99-125-1 genome, July 2009 extraction
Descriptive
TypeOfResource
Dataset
TitleInfo
Title
Cranberry (Vaccinium macrocarpon) clone CNJ99-125-1 genome, July 2009 extraction
Identifier
(displayLabel = NCBI registration number);
(type = NCBI registration number)
65577
Identifier
(type = hdl)
http://hdl.rutgers.edu/1782.1/rucore00000002131.Dataset.m000003398
Genre
(authority = RURes_RUResearchGenre)
Research data
Genre
(authority = RuRes_DataTypeOrMethodology)
Color space data
Genre
(authority = RuRes_subjectOfStudy)
Living specimens
Subject
(authority = DC_taxon_specificEpithet)
Topic
Vaccinium macrocarpon
Subject
HierarchicalGeographic
Country
UNITED STATES
State
New Jersey
County
Burlington County
City
Chatsworth (N.J.)
Abstract
(type = Summary)
Vaccinium macrocarpon clone CNJ99-125-1, a fifth-generation inbred clone derived from self-pollination of the cultivar Ben Lear. Sequencing methodology: Mate-paired library, 1.5-2 kilobase pair (kb) fragments.
PhysicalDescription
Form
(authority = local)
CSFASTA and QUAL files representing the genome from a single sample
Extent
(unit = digital file(s))
4
InternetMediaType
application/gzip
Name
(type = personal)
NamePart
(type = family)
Vorsa
NamePart
(type = given)
Nicholi
Role
RoleTerm
(authority = RULIB);
(type = text)
principal investigator
Name
(type = personal)
NamePart
(type = family)
Polashock
NamePart
(type = given)
James
Role
RoleTerm
(authority = marcrelator);
(type = text)
Researcher
Name
(type = personal)
NamePart
(type = family)
Georgi
NamePart
(type = given)
Laura
Role
RoleTerm
(authority = marcrelator);
(type = text)
Researcher
Name
(type = corporate)
NamePart
Philip E. Marucci Center for Blueberry and Cranberry Research and Extension
Role
RoleTerm
(authority = marcrelator);
(type = text)
Sponsor
Name
(type = corporate)
NamePart
United States. Dept. of Agriculture. Specialty Crop Research Initiative
Role
RoleTerm
(authority = marcrelator);
(type = text)
Sponsor
Name
(type = corporate)
NamePart
National Institute of Food and Agriculture (U.S.)
Role
RoleTerm
(authority = marcrelator);
(type = text)
Sponsor
OriginInfo
DateIssued
(encoding = w3cdtf);
(point = start);
(qualifier = exact)
2009
Extension
DescriptiveEvent
Type
Grant award
Label
Breeding and genetics of fruit-rot resistance and polyphenolics in the American cranberry
DateTime
(encoding = w3cdtf);
(point = start)
2008-09
DateTime
(encoding = w3cdtf);
(point = end)
2012-08
Detail
Funded by the U.S. Department of Agriculture Specialty Crop Research Initiative September 2008-August 2012
AssociatedEntity
Role
Service provider
Name
Waksman Genomics Core Facility
Affiliation
Waksman Genomics Core Facility, Rutgers University
Reference
http://genomics.rutgers.edu/index.php
AssociatedEntity
Role
Researcher
Name
Vorsa, Nicholi
AssociatedEntity
Role
Researcher
Name
Georgi, Laura
AssociatedEntity
Role
Researcher
Name
Polashock, James
Affiliation
USDA-ARS
AssociatedEntity
Role
Researcher
Name
Patten, Kim
Affiliation
Washington State University
AssociatedEntity
Role
Funder
Name
USDA Specialty Crop Research Initiative
AssociatedEntity
Role
Researcher
Name
Singh, Ajay
AssociatedEntity
Role
Researcher
Name
Tadych, Mariusz
AssociatedObject
Type
Grant abstract
Relationship
References
Identifier
(type = grant award number)
2008-51180-04878
Reference
http://pemaruccicenter.rutgers.edu/assets/PDF/prog/ACGABreedingAbstract_Summer2009-Breeding-geneticsOfFruit-rotResistance.pdf
Extension
DescriptiveEvent
Type
Grant award
Label
Cranberry and blueberry breeding, disease and insect management
DateTime
(encoding = w3cdtf)
2008-08-01
DateTime
(encoding = w3cdtf);
(point = end)
2009-08
Detail
Funded by USDA National Institute of Food and Agriculture from August 2008-August 2009
AssociatedEntity
Role
Service provider
Name
Waksman Genomics Core Facility
Affiliation
Waksman Genomics Core Facility, Rutgers University
Reference
http://genomics.rutgers.edu/index.php
AssociatedEntity
Role
Researcher
Name
Oudemans, Peter
AssociatedEntity
Role
Researcher
Name
Polashock, James
Affiliation
USDA Agricultural Research Service
AssociatedEntity
Role
Researcher
Name
Howell, Amy
AssociatedEntity
Role
Researcher
Name
Vorsa, Nicholi
AssociatedEntity
Role
Researcher
Name
Rodriquez-Saona, Cesar
AssociatedEntity
Role
Researcher
Name
Michael, T.P.
AssociatedObject
Type
Grant abstract
Identifier
(type = grant award number)
NJ31921
Extension
DescriptiveEvent
Type
Gene sequencing
Label
Vaccinium macrocarpon clone CNJ99-125-1, a fifth-generation inbred clone derived from self-pollination of the cultivar Ben Lear.
Detail
Sequencing took place at the Waksman Genomics Core Facility (contact David Sidote) using the Applied Biosystems SOLiD 3 Plus. Sequencing methodology was Mate-paired library, 1.5-2 kilobase pair (kb) fragments.
AssociatedEntity
Role
Service provider
Name
Waksman Genomics Core Facility
Reference
http://genomics.rutgers.edu/index.php
AssociatedObject
Type
Instrument
Relationship
Used for
Name
Applied Biosystems SOLiD 3 Plus System
Reference
http://www3.appliedbiosystems.com/cms/groups/mcb_marketing/documents/generaldocuments/cms_072050.pdf
Detail
Gene sequencer.
Note
(type = content)
The four files represent data from a single sample.
Solid309_2010301_2Cranberry_MP_F3.csfasta (G-ZIP file-1) is the sequence data from the forward read of the sample.
Solid309_2010301_2Cranberry_MP_F3.qual (GZIP file-2) is its associated quality score.
Solid309_2010301_2Cranberry_MP_R3.csfasta (GZIP file-3) is the sequence data from the reverse read of the sample.
Solid309_2010301_2Cranberry_MP_R3.qual (GZIP file-4) is its associated quality score.
Solid309_2010301_2Cranberry_MP_F3.csfasta (G-ZIP file-1) is the sequence data from the forward read of the sample.
Solid309_2010301_2Cranberry_MP_F3.qual (GZIP file-2) is its associated quality score.
Solid309_2010301_2Cranberry_MP_R3.csfasta (GZIP file-3) is the sequence data from the reverse read of the sample.
Solid309_2010301_2Cranberry_MP_R3.qual (GZIP file-4) is its associated quality score.
RelatedItem
(type = host)
Identifier
(type = local)
rucore00000002122
TitleInfo
Title
Philip E. Marucci Center for Blueberry and Cranberry Research and Extension
Location
PhysicalLocation
(authority = local);
(displayLabel = Rutgers University)
NjNbRU
Classification
(authority = RUresearch);
(edition = Data)
Identifier
(type = doi)
doi:10.7282/T3J38S13
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Technical
ContentModel
Dataset
MimeType
(TYPE = file)
application/pdf
MimeType
(TYPE = container)
application/x-tar
FileSize
(UNIT = bytes)
30720
Checksum
(METHOD = SHA1)
f7e85375e3dcc1a260b442ced10db2e3cd275ec4
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Statistical Profile